Dataset and Genome Reference:


Gene Name (ex: HBB), Region (ex: 11:5246696-5248301 or chr11:5246696-5248301), Position (ex: 11:5248232 or chr11:5248232) or Variant ID (ex: rs334).
Search HLA variants (SABE-1171-WGS hg38).




Variant Quality Filter :
GATK PASS filter
CEGH-USP Excluding FDP Excluding FAB
EXONIC or SPLICING/CDS VARIANTS ONLY
















CEGH-USP Flag CODES (?)
Chr Start position Ref Alt Annotation Gene Predicted consequence dbSNP150 GATK-VQSR Flag CEGH-USP Flag Homo zygotes Hemi zygotes Allele number Allele count Frequency Cohort