Mobile Element Insertions - MEIs (SABE-1171-WGS hg38).
From the 1,171 SABE WGS reads, we have detected a set of 7,490 nonredundant MEIs, including 5,971 Alu events, 1,131 L1 events, 375 SVA (SINE-R, VNTR, and Alu composite), and 13 events of Human Endogenous Retrovirus K (HERV).
We classified these MEIs into (i) Shared (i.e., MEIs present in two or more unrelated SABE individuals and also in genomes from Database of Genomic Variation (DGV), which include gnomAD genomes; (ii) SABE-private events (present in two or more SABE genomes, but absent in other genomes from DGV); and (iii) Singletons, events present in only one SABE individual.
When MELT is unable to mount the MEI, the length cannot be inferred and is represented as "-" in the table.
Chr | Start position | MEI length (bp) | MEI class | Overlapping genes | Region | Frequency group | Frequency | Cohort |
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